Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6112791 chr20:2067307 C/G 3.43E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs61266539 chr9:72976974 C/T 1.91E-5 489 30.8 31.4 22.45 KM Plot
PRAD rs61290465 chr1:202740716 A/T 5.46E-6 490 30.87 30.77 37.17 KM Plot
PRAD rs61306245 chr1:6286906 A/G 0.000144 488 30.8 31.37 24.2 KM Plot
PRAD rs613121 chr8:104007506 C/T 0.000176 488 31.28 28.65 16.58 KM Plot
PRAD rs61394581 chr18:39468175 C/A 8.75E-7 490 29.23 38.58 21.9 KM Plot
PRAD rs61459816 chr6:42956868 G/A 0 489 30.75 31.93 20.25 KM Plot
PRAD rs61670595 chr11:68205146 G/T 3.69E-6 490 29.4 33.07 26.33 KM Plot
PRAD rs61734108 chr19:53156943 G/A 1.35E-8 492 30.9 30.77 26.13 KM Plot
PRAD rs61742303 chr17:79634774 A/T 4.34E-5 489 30.78 31.32 25.67 KM Plot
PRAD rs61771056 chr1:16349336 C/T 4.02E-5 492 31.37 26.18 24.27 KM Plot
PRAD rs61780112 chr1:31835347 T/C 7.93E-6 494 31 31.27 22.87 KM Plot
PRAD rs61780647 chr1:93936610 A/G 6.38E-6 490 31.27 27.13 33.37 KM Plot
PRAD rs61783986 chr1:16329006 A/G 2.35E-5 494 31.93 26.03 67.52 KM Plot
PRAD rs61783987 chr1:16337908 C/T 2.4E-5 493 31.9 25.83 67.52 KM Plot